Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Jcvi | 650 | 1 | 1 | 4 months ago | 97 | August 30, 2023 | 41 | bsd-2-clause | Python | |
Python library to facilitate genome assembly, annotation, and comparative genomics | ||||||||||
Vcfr | 225 | 25 | 29 | 5 months ago | 16 | December 08, 2023 | 39 | R | ||
Tools to work with variant call format files | ||||||||||
Gfatools | 181 | 6 months ago | 17 | C | ||||||
Tools for manipulating sequence graphs in the GFA and rGFA formats | ||||||||||
Hickit | 69 | 3 years ago | 10 | C | ||||||
TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C | ||||||||||
Coolpuppy | 66 | 4 months ago | 23 | July 11, 2023 | 3 | mit | Python | |||
A versatile tool to perform pile-up analysis on Hi-C data in .cool format. | ||||||||||
Msigdbr | 52 | 11 | 2 years ago | 7 | March 30, 2022 | 3 | other | R | ||
MSigDB gene sets for multiple organisms in a tidy data format | ||||||||||
Bac Genomics Scripts | 28 | 4 years ago | 12 | gpl-3.0 | Perl | |||||
Collection of scripts for bacterial genomics | ||||||||||
Readdatastores.jl | 10 | 9 months ago | 2 | mit | Julia | |||||
Datastores for reads, not your papa's FASTQ files. | ||||||||||
Ucscbeacon | 10 | 9 years ago | 3 | Python | ||||||
A GA4GH Draft Beacon implementation | ||||||||||
Scrattch.io | 7 | 2 years ago | 10 | other | R | |||||
Functions for handling RNA-seq files and formats as input and output for scrattch functions. |