Project Name	Stars	Most Recent Commit	Open Issues	License	Language
Codex2	29	3 years ago	1	gpl-2.0	R
Full-spectrum copy number variation detection by high-throughput DNA sequencing
Shallowhrd	28	6 months ago			R
This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).
Eacon	14	3 years ago	3	mit	R
Easy Copy Number !
Hammlet	10	4 years ago	2	gpl-3.0	C++
Fast Bayesian Hidden Markov Model with Wavelet Compression
Cometgazer	8	5 years ago			Shell
COMETgazer mehylation analysis software suite
Codex	8	5 years ago		gpl-2.0	R
A normalization and copy number variation calling procedure for whole exome DNA sequencing data.
Ideas_2018	5	4 years ago	4	mit	C++
Jointly characterizing epigenetic dynamics across multiple cell types

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Codex2 ⭐ 29

Full-spectrum copy number variation detection by high-throughput DNA sequencing

most recent commit 3 years ago

Shallowhrd ⭐ 28

This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).

most recent commit 6 months ago

Eacon ⭐ 14

Easy Copy Number !

most recent commit 3 years ago

Hammlet ⭐ 10

Fast Bayesian Hidden Markov Model with Wavelet Compression

most recent commit 4 years ago

Cometgazer ⭐ 8

COMETgazer mehylation analysis software suite

most recent commit 5 years ago

Codex ⭐ 8

A normalization and copy number variation calling procedure for whole exome DNA sequencing data.

most recent commit 5 years ago

Ideas_2018 ⭐ 5

Jointly characterizing epigenetic dynamics across multiple cell types

most recent commit 4 years ago

Suggest An Alternative To EaCoN

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