Shallowhrd
This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Codex2 | 29 | 3 years ago | 1 | gpl-2.0 | R | |||||
| Full-spectrum copy number variation detection by high-throughput DNA sequencing | ||||||||||
| Shallowhrd | 28 | 6 months ago | R | |||||||
| This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs). | ||||||||||
| Codex | 8 | 5 years ago | gpl-2.0 | R | ||||||
| A normalization and copy number variation calling procedure for whole exome DNA sequencing data. | ||||||||||
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R
Segmentation
Genome
Sequencing