Grocsvs
Genome-wide reconstruction of complex structural variants
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Deepvariant | 2,978 | 6 months ago | 8 | bsd-3-clause | Python | |||||
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
| Gatk | 1,576 | 2 | 3 months ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
| Official code repository for GATK versions 4 and up | ||||||||||
| Hail | 905 |  | 17 | 5 months ago | 146 | October 30, 2023 | 211 | mit | Python | |
| Cloud-native genomic dataframes and batch computing | ||||||||||
| Applied Computational Genomics | 887 | 5 months ago | 8 | cc-by-sa-4.0 | ||||||
| Applied Computational Genomics Course at UU: Spring 2020 | ||||||||||
| Ncbi Genome Download | 784 |  | 2 | 6 | a year ago | 25 | July 28, 2023 | 38 | apache-2.0 | Python |
| Scripts to download genomes from the NCBI FTP servers | ||||||||||
| Jcvi | 650 |  | 1 | 1 | 6 months ago | 97 | August 30, 2023 | 41 | bsd-2-clause | Python |
| Python library to facilitate genome assembly, annotation, and comparative genomics | ||||||||||
| Bowtie2 | 594 | 5 months ago | 143 | gpl-3.0 | C++ | |||||
| A fast and sensitive gapped read aligner | ||||||||||
| Hifiasm | 443 | 5 months ago | 324 | mit | C++ | |||||
| Hifiasm: a haplotype-resolved assembler for accurate Hifi reads | ||||||||||
| Megahit | 442 | a year ago | 78 | gpl-3.0 | C++ | |||||
| Ultra-fast and memory-efficient (meta-)genome assembler | ||||||||||
| Jbrowse | 437 |  | 1 | 2 | a year ago | 30 | July 12, 2019 | 164 | other | JavaScript |
| Full-featured and stable genome browser built with JavaScript and HTML5. | ||||||||||
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