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Smallgenomeutilities

smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.
Stars
10
License
gpl-2.0
Open Issues
4
Most Recent Commit
9 months ago
Programming Language
Python
Total Releases
6
Latest Release
August 03, 2023
Categories
Repo
Alternatives To Smallgenomeutilities
Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Mosdepth617
5 months ago49mitNim
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Coverm237cargo coverm} Downloads13 months ago9February 24, 202150gpl-3.0Rust
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4 months ago19apache-2.0R
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Rasusa156
4 months ago11April 06, 20233mitRust
Randomly subsample sequencing reads to a specified coverage
Estimate_genome_size.pl53
a year ago6Perl
Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
Cnview50
6 years ago3mitR
Visualization and annotation of CNVs from population-scale whole-genome sequencing data
Physalia Lcwgs43
7 months agoHTML
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
Seqcover38
3 years ago3mitNim
seqcover allows user to view coverage for hundreds of genes and dozens of samples
Ploidyngs35
a year ago1gpl-3.0HTML
Explore ploidy levels from NGS data alone
Organelle_pba23
6 years ago8Perl
A software to assemble chloroplast and mitochodrial genomes using PacBio data
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