Soap3 Dp
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Plant Seg | 81 | 3 months ago | 22 | mit | Python | |||||
| A tool for cell instance aware segmentation in densely packed 3D volumetric images | ||||||||||
| Cell_blast | 74 | 9 months ago | 8 | February 08, 2023 | 5 | mit | Python | |||
| A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation. | ||||||||||
| Rapids_singlecell | 66 | 3 months ago | 19 | November 14, 2023 | 8 | mit | Jupyter Notebook | |||
| Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis. | ||||||||||
| Arioc | 54 | 7 months ago | bsd-3-clause | |||||||
| Arioc: GPU-accelerated DNA short-read alignment | ||||||||||
| Gblastn | 52 | 2 years ago | 2 | mit | C++ | |||||
| G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST. | ||||||||||
| Scaden | 40 | 3 years ago | 13 | June 10, 2021 | 11 | mit | Python | |||
| Deep Learning based cell composition analysis with Scaden. | ||||||||||
| Megadock | 38 | 5 months ago | 2 | other | C++ | |||||
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| Wfa Gpu | 24 | 4 months ago | mit | C | ||||||
| GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment | ||||||||||
| Soap3 Dp | 24 | 3 years ago | C | |||||||
| To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously. | ||||||||||
| Hibag | 23 | 3 months ago | 13 | C++ | ||||||
| R package – HLA Genotype Imputation with Attribute Bagging (development version only) | ||||||||||
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