Project Name	Stars	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Nanopolish	496	a year ago			60	mit	C++
Signal-level algorithms for MinION data
Trycycler	264	8 months ago			3	gpl-3.0	Python
A tool for generating consensus long-read assemblies for bacterial genomes
August 2019 Consensus Accuracy Update	39	5 years ago			2	gpl-3.0	Python
A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
Genome Data Integration	35	2 years ago			3		Shell
Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
Heterogeneity	23	3 years ago					R
Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
Seqmule	21	3 years ago			45	other	C++
Automated human exome/genome variants detection from FASTQ files
Pipeline Umi Amplicon	21	a year ago			10	other	Python
Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
Hapo G	18	7 months ago			3	other	C
Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
Kindel	18	4 years ago	12	December 14, 2020	9	gpl-3.0	Python
Indel-aware consensus from a SAM/BAM alignment
Tracespipe	16	a year ago				gpl-3.0	Shell
Reconstruction and analysis of viral and host genomes at multi-organ level

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Nanopolish ⭐ 496

Signal-level algorithms for MinION data

most recent commit a year ago

Trycycler ⭐ 264

A tool for generating consensus long-read assemblies for bacterial genomes

most recent commit 8 months ago

August 2019 Consensus Accuracy Update ⭐ 39

A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies

most recent commit 5 years ago

Genome Data Integration ⭐ 35

Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls

most recent commit 2 years ago

Heterogeneity ⭐ 23

Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

most recent commit 3 years ago

Seqmule ⭐ 21

Automated human exome/genome variants detection from FASTQ files

most recent commit 3 years ago

Pipeline Umi Amplicon ⭐ 21

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

most recent commit a year ago

Hapo G ⭐ 18

Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.

most recent commit 7 months ago

Kindel ⭐ 18

Indel-aware consensus from a SAM/BAM alignment

total releases 12most recent commit 4 years ago

Tracespipe ⭐ 16

Reconstruction and analysis of viral and host genomes at multi-organ level

most recent commit a year ago

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Alternative Project Comparisons

Genevieve vs Nanopolish

Genevieve vs Trycycler

Genevieve vs August 2019 Consensus Accuracy Update

Genevieve vs Genome Data Integration

Genevieve vs Heterogeneity

Genevieve vs Seqmule

Genevieve vs Pipeline Umi Amplicon

Genevieve vs Hapo G

Genevieve vs Kindel

Genevieve vs Tracespipe

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