Trycycler
A tool for generating consensus long-read assemblies for bacterial genomes
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Nanopolish | 496 | 8 months ago | 60 | mit | C++ | |||||
| Signal-level algorithms for MinION data | ||||||||||
| Trycycler | 264 | 6 months ago | 3 | gpl-3.0 | Python | |||||
| A tool for generating consensus long-read assemblies for bacterial genomes | ||||||||||
| August 2019 Consensus Accuracy Update | 39 | 5 years ago | 2 | gpl-3.0 | Python | |||||
| A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies | ||||||||||
| Genome Data Integration | 35 | 2 years ago | 3 | Shell | ||||||
| Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls | ||||||||||
| Heterogeneity | 23 | 3 years ago | R | |||||||
| Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes | ||||||||||
| Seqmule | 21 | 3 years ago | 45 | other | C++ | |||||
| Automated human exome/genome variants detection from FASTQ files | ||||||||||
| Pipeline Umi Amplicon | 21 | a year ago | 10 | other | Python | |||||
| Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers | ||||||||||
| Hapo G | 18 | 5 months ago | 3 | other | C | |||||
| Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads. | ||||||||||
| Kindel | 18 | 3 years ago | 12 | December 14, 2020 | 9 | gpl-3.0 | Python | |||
| Indel-aware consensus from a SAM/BAM alignment | ||||||||||
| Tracespipe | 16 | 10 months ago | gpl-3.0 | Shell | ||||||
| Reconstruction and analysis of viral and host genomes at multi-organ level | ||||||||||
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Python
Assembly
Genome
Consensus