Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Deepvariant	2,978			5 months ago			8	bsd-3-clause	Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Gatk	1,576		2	2 months ago	46	March 16, 2023	1,299	other	Java
Official code repository for GATK versions 4 and up
Hail	905		17	4 months ago	146	October 30, 2023	211	mit	Python
Cloud-native genomic dataframes and batch computing
Applied Computational Genomics	887			4 months ago			8	cc-by-sa-4.0
Applied Computational Genomics Course at UU: Spring 2020
Ncbi Genome Download	784	2	6	10 months ago	25	July 28, 2023	38	apache-2.0	Python
Scripts to download genomes from the NCBI FTP servers
Jcvi	650	1	1	5 months ago	97	August 30, 2023	41	bsd-2-clause	Python
Python library to facilitate genome assembly, annotation, and comparative genomics
Bowtie2	594			4 months ago			143	gpl-3.0	C++
A fast and sensitive gapped read aligner
Hifiasm	443			4 months ago			324	mit	C++
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Megahit	442			a year ago			78	gpl-3.0	C++
Ultra-fast and memory-efficient (meta-)genome assembler
Jbrowse	437	1	2	a year ago	30	July 12, 2019	164	other	JavaScript
Full-featured and stable genome browser built with JavaScript and HTML5.

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Deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

most recent commit 5 months ago

Gatk ⭐ 1,576

Official code repository for GATK versions 4 and up

dependent packages 2total releases 46most recent commit 2 months ago

Hail ⭐ 905

Cloud-native genomic dataframes and batch computing

dependent packages 17total releases 146most recent commit 4 months ago

Applied Computational Genomics ⭐ 887

Applied Computational Genomics Course at UU: Spring 2020

most recent commit 4 months ago

Ncbi Genome Download ⭐ 784

Scripts to download genomes from the NCBI FTP servers

dependent packages 6total releases 25most recent commit 10 months ago

Jcvi ⭐ 650

Python library to facilitate genome assembly, annotation, and comparative genomics

dependent packages 1total releases 97most recent commit 5 months ago

Bowtie2 ⭐ 594

A fast and sensitive gapped read aligner

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Hifiasm ⭐ 443

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

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Megahit ⭐ 442

Ultra-fast and memory-efficient (meta-)genome assembler

most recent commit a year ago

Jbrowse ⭐ 437

Full-featured and stable genome browser built with JavaScript and HTML5.

dependent packages 2total releases 30most recent commit a year ago

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