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Search results for wgs
wgs
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27 search results found
Mosdepth
⭐
617
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Platon
⭐
93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Wholegenomesequencing
⭐
86
Whole Genome Sequencing analysis, WGS analysis
Referenceseeker
⭐
85
Rapid determination of appropriate reference genomes.
Raredisease
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64
Call and score variants from WGS/WES of rare disease patients.
Sv Callers
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52
Snakemake-based workflow for detecting structural variants in genomic data
Cyrius
⭐
42
A tool to genotype CYP2D6 with WGS data
Seqarray
⭐
41
Data management of large-scale whole-genome sequence variant calls (Development version only)
Kourami
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23
Kourami: Graph-guided assembly for HLA alleles
Pan Zea_construct
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21
Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
Tadrep
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18
Targeted Detection and Reconstruction of Plasmids
Daylily
⭐
15
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
Icnv
⭐
15
Integrated copy number variation detection toolset
Rmap
⭐
15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
Xutil
⭐
13
经纬度转换,sqlldr入库,Geometry工具
Vsnp
⭐
13
vSNP -- validate SNPs
Transflow
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12
A snakemake workflow for WGS-based tuberculosis transmission analysis
Seave
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12
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling fr
Pyseqarray
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12
PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
Bacterial_wgs_training
⭐
9
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
Wgs_sample_preparation
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9
Trim, Align to genome, Deduplicate, Realign WGS sequencing samples
Nextgenseq_pipeline
⭐
8
Exome/Capture/RNASeq Pipeline Implementation using snakemake
Marvel
⭐
7
Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape
Sideretro
⭐
7
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
Bagep
⭐
7
A pipeline for Bacterial Whole genome sequence data analysis
Bam Lorenz Coverage
⭐
6
Generate Lorenz plots and Coverage plots directly from BAM files
Baargin
⭐
6
Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow
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