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12 search results found

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Referenceseeker ⭐ 85

Rapid determination of appropriate reference genomes.

Sv Callers ⭐ 52

Snakemake-based workflow for detecting structural variants in genomic data

A tool to genotype CYP2D6 with WGS data

Targeted Detection and Reconstruction of Plasmids

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

vSNP -- validate SNPs

Pyseqarray ⭐ 12

PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)

Nextgenseq_pipeline ⭐ 8

Exome/Capture/RNASeq Pipeline Implementation using snakemake

A pipeline for Bacterial Whole genome sequence data analysis

Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape

Bam Lorenz Coverage ⭐ 6

Generate Lorenz plots and Coverage plots directly from BAM files

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