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10 search results found

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Referenceseeker ⭐ 85

Rapid determination of appropriate reference genomes.

Sv Callers ⭐ 52

Snakemake-based workflow for detecting structural variants in genomic data

Seqarray ⭐ 41

Data management of large-scale whole-genome sequence variant calls (Development version only)

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS

Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling fr

Transflow ⭐ 12

A snakemake workflow for WGS-based tuberculosis transmission analysis

Pyseqarray ⭐ 12

PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)

Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape

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