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8 search results found
V Pipe
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119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Fastv
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56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Uniquekmer
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33
Generate unique KMERs for every contig in a FASTA file
Vapid
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27
VAPiD: Viral Annotation and Identification Pipeline
Pathogentrack
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22
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
Tracespipe
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16
Reconstruction and analysis of viral and host genomes at multi-organ level
Jovian
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12
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Vicaller
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8
A software to detect virome-wide integrations
Esviritu
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7
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Decontaminer
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5
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da
Ngshmmalign
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5
ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and HCV) that experience substantial biological insertions and deletions
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