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12 search results found

Strutil ⭐ 245

Golang metrics for calculating string similarity and other string utility functions

Sneakysnake ⭐ 44

SneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.

Minineedle ⭐ 29

Needleman-Wunsch and Smith-Waterman algorithms in python

SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)

Diagonalsw ⭐ 18

C/C++ implementation of the Smith-Waterman algorithm by using SIMD operations (e.g SSE4.1)

Seqalign ⭐ 14

Collection of sequence alignment algorithms.

A collection of useful algorithms and data structures for bioinformatics

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

Sda_examples_aws ⭐ 6

Examples for SDAccel 2017.1+ on AWS F1 instances

GPU-based DNA sequence alignment program using Smith-Waterman

Bio Alignment ⭐ 5

Implementation of Needleman-Wunsch, Smith-Waterman, Hirschberg and affine bioinformatics algorithms for alighning biological sequences

Dynamic Programming in Erlang.

Related Searches

Needleman Wunsch Smith Waterman (10)

Sequence Alignment Smith Waterman (9)

Algorithms Smith Waterman (8)

Bioinformatics Smith Waterman (8)

Python Smith Waterman (4)

Simd Smith Waterman (4)

Dynamic Programming Smith Waterman (4)

C Smith Waterman (3)

Javascript Smith Waterman (3)

C Plus Plus Smith Waterman (3)

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