Awesome Open Source

Programming Languages

Search results for needleman wunsch smith waterman

needleman-wunsch x

smith-waterman x

7 search results found

Sneakysnake ⭐ 44

SneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.

Minineedle ⭐ 29

Needleman-Wunsch and Smith-Waterman algorithms in python

Seqalign ⭐ 14

Collection of sequence alignment algorithms.

A collection of useful algorithms and data structures for bioinformatics

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

Bio Alignment ⭐ 5

Implementation of Needleman-Wunsch, Smith-Waterman, Hirschberg and affine bioinformatics algorithms for alighning biological sequences

Dynamic Programming in Erlang.

Related Searches

Algorithms Needleman Wunsch (10)

Sequence Alignment Smith Waterman (9)

Algorithms Smith Waterman (8)

Bioinformatics Needleman Wunsch (8)

Bioinformatics Smith Waterman (8)

Sequence Alignment Needleman Wunsch (7)

Dynamic Programming Needleman Wunsch (7)

Python Needleman Wunsch (6)

Python Smith Waterman (4)

Simd Smith Waterman (4)

1-7 of 7 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.