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Sneakysnake ⭐ 44

SneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.

Sequence_align ⭐ 39

Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.

Minineedle ⭐ 29

Needleman-Wunsch and Smith-Waterman algorithms in python

Needleman Wunsch ⭐ 28

Interactive Visualization of Needleman-Wunsch Algorithm in Javascript

Seqalign ⭐ 14

Collection of sequence alignment algorithms.

Cpp Openmp Needleman Wunsch ⭐ 7

🔬 🏁 Comparison of DNA Sequences

A collection of useful algorithms and data structures for bioinformatics

Short implementation (~500 lines) of the Gotoh algorithm, a.k.a. Needleman-Wunsch with affine gap penalties.

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

Bio Alignment ⭐ 5

Implementation of Needleman-Wunsch, Smith-Waterman, Hirschberg and affine bioinformatics algorithms for alighning biological sequences

Dynamic Programming in Erlang.

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