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needleman-wunsch x

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4 search results found

Sneakysnake ⭐ 44

SneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.

Sequence_align ⭐ 39

Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.

Seqalign ⭐ 14

Collection of sequence alignment algorithms.

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

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