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Search results for sequencing fasta
fasta
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sequencing
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36 search results found
Htsjdk
⭐
271
A Java API for high-throughput sequencing data (HTS) formats.
Soapdenovo2
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197
Next generation sequencing reads de novo assembler.
Genomics
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154
A collection of scripts and notes related to genomics and bioinformatics
Mirdeep2
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120
Discovering known and novel miRNAs from small RNA sequencing data
Seqfu2
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96
🚀 seqfu - Sequece Fastx Utilities
Assembly Stats
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92
Get assembly statistics from FASTA and FASTQ files
Mcclintock
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83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
Opengene.jl
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61
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Dbg2olc
⭐
60
The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
Flexbar
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59
flexible barcode and adapter removal
Fastv
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56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Fastaq
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45
Python3 scripts to manipulate FASTA and FASTQ files
Fluentdna
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43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Assembly_improvement
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39
Improve the quality of a denovo assembly by scaffolding and gap filling
Uniquekmer
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33
Generate unique KMERs for every contig in a FASTA file
Bac Genomics Scripts
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28
Collection of scripts for bacterial genomics
Assembler Components
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20
Components of genome sequence assembly tools
Npscarf
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19
Plasmidseeker
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18
A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
Nanovar Archived
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17
Archived version 1.0.2
Enasearch
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15
A Python library for interacting with ENA's API
Mlst_check
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14
Multilocus sequence typing by blast using the schemes from PubMLST
Angsd Wrapper
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13
Utilities for analyzing next generation sequencing data.
Hadoopcnv
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12
HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data
Wessim
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12
Wessim: Whole Exome Sequencing SIMulator using in silico exome capture
Seal
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11
SEquence ALignment evaluation suite
Sequencing_for_genetics
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11
유전학자를 위한 시퀀싱 자료 분석
Seq Collection
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9
Psite
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9
Simulate next-generation sequencing reads for tumor samples
Chopstitch
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9
Finding putative exons and constructing splicegraphs using Trans-ABySS contigs
Itdseek
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9
FLT3 ITD detection (ITDseek) and simulation (ITDsim)
Sqanti
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9
Seqkit
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7
Toolkit for manipulating FASTA and SAM files
Lrcstats
⭐
7
An open-source pipeline for benchmarking DNA long read correction algorithms for third generation sequencing technology
Svgen
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6
Simulator for structural variants in various types of next-generation sequencing data
Flea Pipeline
⭐
5
A pipeline for long-read sequencing data.
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1-36 of 36 search results
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