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Search results for sam vcf

17 search results found

C library for high-throughput sequencing data formats

Nucleus ⭐ 675

Python and C++ code for reading and writing genomics data.

BWK awk modified for biological data

A Java API for high-throughput sequencing data (HTS) formats.

Genozip ⭐ 144

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

A DNA Sequence Alignment/Map (SAM) library for Clojure

Hadoop Bam ⭐ 66

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

Frequently used commands in bioinformatics

A library for manipulating bioinformatics sequencing formats in Apache Spark

Leviosam ⭐ 27

Lift-over alignments from variant-aware references

Pandas-based Data Handler for VCF, BED, and SAM Files

Color DNA/RNA bases in terminal output

Microhaplot ⭐ 11

microhaplotype visualizer and analyzer

Metalnx Msi ⭐ 5

Metalnx Micro Services for iRODS

Super sensitive mutation validator, uses sam/bam and vcf

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