Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Htslib | 762 | 1 | 7 days ago | 11 | June 14, 2023 | 160 | other | C | ||
C library for high-throughput sequencing data formats | ||||||||||
Nucleus | 675 | 2 | 3 years ago | 18 | August 31, 2021 | 1 | other | C++ | ||
Python and C++ code for reading and writing genomics data. | ||||||||||
Bioawk | 518 | 2 years ago | 1 | March 03, 2021 | 22 | C | ||||
BWK awk modified for biological data | ||||||||||
Htsjdk | 271 | 170 | 87 | 3 months ago | 78 | October 13, 2023 | 303 | Java | ||
A Java API for high-throughput sequencing data (HTS) formats. | ||||||||||
Genozip | 144 | 2 months ago | 132 | October 19, 2022 | other | C | ||||
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too | ||||||||||
Cljam | 87 | 2 months ago | 37 | May 10, 2019 | 6 | apache-2.0 | Clojure | |||
A DNA Sequence Alignment/Map (SAM) library for Clojure | ||||||||||
Hadoop Bam | 66 | 37 | 33 | 5 years ago | 17 | April 23, 2018 | 40 | mit | Java | |
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework | ||||||||||
Fuc | 38 | 2 | 7 months ago | 44 | September 09, 2023 | 3 | mit | Python | ||
Frequently used commands in bioinformatics | ||||||||||
Disq | 31 | 3 | 7 months ago | 10 | February 09, 2021 | 17 | mit | Java | ||
A library for manipulating bioinformatics sequencing formats in Apache Spark | ||||||||||
Leviosam | 27 | 2 years ago | 2 | mit | C++ | |||||
Lift-over alignments from variant-aware references |