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Search results for rna seq transcriptome

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10 search results found

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Sccatch ⭐ 171

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Startapp ⭐ 71

The START App: R Shiny Transcriptome Analysis Resource Tool

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

Transabyss ⭐ 30

de novo assembly of RNA-seq data using ABySS

Tailseeker ⭐ 18

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Lr Splitpipe ⭐ 13

Demultiplexing and debarcoding tool designed for LR-Split-seq data.

AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data

Trendcatcher ⭐ 7

TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255

An application for exploring and visualizing differential gene expression data created with DESeq2

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