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Search results for transcriptome
transcriptome
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30 search results found
Salmon
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661
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Nanosim
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196
Nanopore sequence read simulator
Sccatch
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171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Talon
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117
Technology agnostic long read analysis pipeline for transcriptomes
Get_homologues
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98
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Genetonic
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74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Startapp
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71
The START App: R Shiny Transcriptome Analysis Resource Tool
Mavis
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65
Merging, Annotation, Validation, and Illustration of Structural variants
Pancancer
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61
Building classifiers using cancer transcriptomes across 33 different cancer-types
Rattle
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51
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Pcaexplorer
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51
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
Swan_vis
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43
A Python library to visualize and analyze long-read transcriptomes
Gawn
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37
Genome Annotation Without Nightmares
Mytai
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33
Evolutionary Transcriptomics with R
Transabyss
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30
de novo assembly of RNA-seq data using ABySS
Isonclust
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23
De novo clustering of long transcript reads into genes
Tailseeker
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18
Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
Lncpipe
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18
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
Lr Splitpipe
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13
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
Treeexp
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11
TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data
Ancetran
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9
AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data
Isocon
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9
Derives consensus sequences from a set of long noisy reads by clustering and error correction.
Disc
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7
A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning.
Trendcatcher
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7
TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255
Deconica
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7
Deconvolution of transcriptome through Immune Component Analysis
Tutorial
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7
Various tutorials on how to analyse transcriptomic data.
Refex
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6
RefEx: a reference gene expression dataset of mammalian tissues and cell lines measured by different methods
Orthomap
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6
orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
Workflow Is Cwl
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6
This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
Genexvis
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5
An application for exploring and visualizing differential gene expression data created with DESeq2
1-30 of 30 search results
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