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Search results for genome rna seq

25 search results found

Snakepipes ⭐ 359

Customizable workflows based on snakemake and python for the analysis of NGS data

Rnaseq Workflow ⭐ 133

A repository for setting up a RNAseq workflow

Spliced read mapper for RNA-Seq

Scrnaseqpipeline ⭐ 73

Long Reads Annotation pipeline

FEELnc : FlExible Extraction of LncRNA

Agfusion ⭐ 46

Python package to annotate and visualize gene fusions.

Pipeline Nanopore Ref Isoforms ⭐ 35

Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools

RNASeq pipeline

Deepstats ⭐ 27

deepStats: a stastitical toolbox for deeptools and genomic signals

Annogesic ⭐ 25

ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Pipeline Pinfish Analysis ⭐ 22

Pipeline for annotating genomes using long read transcriptomics data with pinfish

Guessmylt ⭐ 20

An efficient way to guess the library type of your RNA-Seq data.

Rnaseq Nf ⭐ 20

RNAseq analysis pipeline

Tailseeker ⭐ 18

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Annotated Genome Optimization Using Transcriptome Information

Pipernaseq ⭐ 16

A comprehensive pipeline for RNAseq data analysis

Pavfinder ⭐ 14

🔍 Post Assembly Variants Finder

Circompara ⭐ 12

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

Piperiboseq ⭐ 10

A comprehensive pipeline for Ribo-seq data analysis

Tag Based_rnaseq ⭐ 10

Cost-efficient genome-wide gene expression profiling

Splicelauncher ⭐ 8

RNAseq pipeline for alternative splicing junctions

A computational toolkit of fast and automatical identification of back-splice junctions of potential circular RNAs (circRNAs) from RNA-seq data.

Rediscover ⭐ 5

RNA editing discovery from NGS data.

SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

Scallopadvising ⭐ 5

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1-25 of 25 search results

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