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Search results for rna seq differential expression
differential-expression
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rna-seq
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16 search results found
Pydeseq2
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470
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Diffexpr
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67
Porting DESeq2 into python via rpy2
Rna Seq Kallisto Sleuth
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63
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Irap
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58
integrated RNA-seq Analysis Pipeline
Differentialabundance
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34
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Datest
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34
Compare different differential abundance and expression methods
Ideal
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28
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
Volcano3d
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28
An R package to plot interactive three-way differential expression analysis
Asap
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24
ASAP : Automated Single-cell Analysis Pipeline
Degreport
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21
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
Microscope
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17
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
Rna Seq Pop
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17
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
Dekupl
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11
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
Debpeak
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8
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
Curare
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6
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
Genexvis
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5
An application for exploring and visualizing differential gene expression data created with DESeq2
Utr_add_extend_gtf
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5
Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.
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1-16 of 16 search results
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