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26 search results found

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Nichenetr ⭐ 416

NicheNet: predict active ligand-target links between interacting cells

Powsimr ⭐ 102

Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.

Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

integrated RNA-seq Analysis Pipeline

Terminus ⭐ 43

Differential Gene Correlation Analysis

Haystack_bio ⭐ 35

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

GREIN : GEO RNA-seq Experiments Interactive Navigator

Rnaseq_titration_results ⭐ 29

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Volcano3d ⭐ 28

An R package to plot interactive three-way differential expression analysis

Big data Regression for predicting DNase I hypersensitivity

ASAP : Automated Single-cell Analysis Pipeline

Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24

This tutorial is created for educational purpose

Fishpond ⭐ 23

Differential expression and allelic analysis, nonparametric statistics

Rnaseq Pipeline ⭐ 18

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Microscope ⭐ 17

ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps

Pipernaseq ⭐ 16

A comprehensive pipeline for RNAseq data analysis

Circompara ⭐ 12

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model

Archive Ruvseq ⭐ 11

Archived version of RUVSeq

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Geneexpressionaging ⭐ 10

Gene expression viewer template

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

Bgee_pipeline ⭐ 8

Source code of the Bgee pipeline used to build the Bgee database

A comprehensive quality-control and quantification RNA-seq pipeline

KnowSeq R package

3’ Tag RNA-seq pipeline (Work in progress)

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