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Search results for jupyter notebook rna seq
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rna-seq
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22 search results found
Single Cell Best Practices
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544
https://www.sc-best-practices.org
Sequana
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136
Sequana: a set of Snakemake NGS pipelines
Geoparse
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98
Python library to access Gene Expression Omnibus Database (GEO)
Biojupies
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94
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Sg Nex Data
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80
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Zika Rnaseq Pipeline
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73
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Cello
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53
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
Clustering_on_transcript_compatibility_counts
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40
Clustering cells from single cell RNA seq assays
Itclust
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39
Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
Tape
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25
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
Scib Reproducibility
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25
Additional code and analysis from the single-cell integration benchmarking project
Pm4ngs
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21
Project Manager for NGS data analysis
Lapa
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18
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
Devcellpy
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18
devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
Rna Seq Pop
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17
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
Uncurl_python
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14
UNCURL is a tool for single cell RNA-seq data analysis.
Rna Seq In The Cloud
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12
An Easy to Use Analysis System for All Human Public bulk RNAseq Data!
Seq Pipeline
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12
Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailscale network to bypass firewalls.
Gear
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10
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
Exseek
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8
exRNA Biomarker Discovery for Liquid Biopsy
Fatecompass
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8
Ciara_python
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6
Implementation of entropy of mixing algorithm in python
Plants Pipeline
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6
This project is an automated pipeline to generate annotated gene expression atlases for kingdoms of life
Tair
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5
The Atlas of Immunoglobulin Repertoires (TheAIR)
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