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95 search results found

Metaflow ⭐ 7,524

🚀 Build and manage real-life ML, AI, and data science projects with ease!

Drake ⭐ 1,332

An R-focused pipeline toolkit for reproducibility and high-performance computing

Gtsummary ⭐ 892

Presentation-Ready Data Summary and Analytic Result Tables

Targets ⭐ 860

Function-oriented Make-like declarative workflows for R

Opencpu ⭐ 690

OpenCPU system for embedded scientific computation and reproducible research

Rrtools ⭐ 619

rrtools: Tools for Writing Reproducible Research in R

papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

Huxtable ⭐ 307

An R package to create styled tables in multiple output formats, with a friendly, modern interface.

An R Pandoc Writer: Convert arbitrary R objects into markdown

Containerit ⭐ 285

Package an R workspace and all dependencies as a Docker container

Canvasxpress ⭐ 282

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

Trackdown ⭐ 183

R package for collaborative writing and editing of R Markdown (or Sweave) documents in Google Docs.

🐳 Containerize R Markdown documents for continuous reproducibility

R interface to the Open Science Framework (OSF)

Rmdtemplates ⭐ 119

Rmarkdown templates for reproducible science

Git2rdata ⭐ 91

An R package for storing and retrieving data.frames in git repositories.

Targets Tutorial ⭐ 90

Short course on the targets R package

Openml R ⭐ 90

R package to interface with OpenML

Sartools ⭐ 87

Statistical Analysis of RNA-Seq Tools

R_tutorial_ed ⭐ 79

R Tutorial for Educational Data Users

Genetonic ⭐ 74

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Groundhog ⭐ 72

Reproducible R Scripts Via Date Controlled Installing & Loading of CRAN & Git Packages

Gittargets ⭐ 69

Data version control for reproducible analysis pipelines in R with {targets}.

🐶 (Re)constructing R computational environments

Targets Shiny ⭐ 60

Example Shiny app containing a targets pipeline.

Lumberjack ⭐ 59

Track changes in data with ease

Drake Examples ⭐ 58

Example workflows for the drake R package

The user manual for the drake R package

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

Pcaexplorer ⭐ 51

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

Reprohack Hq ⭐ 46

ReproHack Headquarters

Targets Minimal ⭐ 45

A minimal example data analysis project with the targets R package

creating optimal conditions for reproducibility

Reproducible ⭐ 40

A set of tools for R that enhance reproducibility beyond package management

Prodigenr ⭐ 36

Project directory generator R package

Rcompendium ⭐ 36

📦 Create a package or compendium structure

Snakemake Econ R ⭐ 35

reproducible research project template for R using Renv and snakemake with an econ application

Software Dev ⭐ 33

Coding Standards for the USC Biostats group

Mlrhyperopt ⭐ 31

Easy Hyper Parameter Optimization with mlr and mlrMBO.

Daiquiri ⭐ 30

Data quality reporting for temporal datasets.

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

Make Example ⭐ 25

An example of using make for a data analysis project

Researchcompendium ⭐ 24

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Miscellaneous tools for reproducible research with R.

Windows version of StatTag

A toolbox for writing Sweave or other LaTeX-based papers and reports and to prettify the output of various estimated models.

Learning_r ⭐ 22

List of resources for learning R

Reproducibility_in_plant_pathology ⭐ 20

A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant pathology research reproducibility and suggestions for ways to improving it.

Repro_web_stack ⭐ 19

The stack I use to make reproducible reports of my statistical analyses

Nowplaying Rs Music Reco Fm ⭐ 18

#nowplaying-RS: Music Recommendation using Factorization Machines

Create academic R markdown projects for open science and reproducible research

Provenance tracking for R.

Represtools ⭐ 17

Reproducible Research Tools

Rrtools.addin ⭐ 17

R Package - A graphical user interface for some of the main functions of Ben Marwick's rrtools package

Repro Workshop ⭐ 16

Cd4 Csaw ⭐ 15

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

Creating virtual environments for R.

Reproducible Research Ctv ⭐ 14

**Archived** CRAN Task View: Reproducible Research

Rep Res Examples ⭐ 14

Awesome Reproducible R ⭐ 13

An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.

Tutorial Residential_segregation_score ⭐ 13

A tutorial & reproducible example on calculating residential segregation indices with decennial US census data (Version 1-0-0)

Rrtools Repro Research ⭐ 13

Tutorial on Reproducible Research in R with rrtools

Analysis With Programming ⭐ 13

Repository of My Old Blog

Cycle Networks ⭐ 12

Paper on prioritizing road segments for cycling infrastructure

Rep Res Exampleproject1 ⭐ 11

An full example reproducible research project for "Reproducible Research with R and RStudio"

Chromatographr ⭐ 11

Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).

Targets Stan ⭐ 11

An example project to validate a Stan model in a targets pipeline

Datelife ⭐ 11

R package containing datelife's core functionality

Import spectral data and related metadata in R

Mandrake ⭐ 11

📖🐉- Bring reading the manual 📖 closer to your drake 🐉 workflow 🔥

Reproducibleresearch ⭐ 10

CRAN Task View: Reproducible Research

Sclerotinia 366 ⭐ 9

Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"

Global Late Blight Metamodelling ⭐ 9

R Scripts and supporting data for creating metamodels, as published in Ecosphere, and using them to generate global estimates of potato late blight risk based on climate data as published in Global Change Biology.

Secretsanta ⭐ 9

flexible pipelines for scalable secretome prediction, R package

Talk Runapp Quarto 2022 ⭐ 9

Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

Portalcasting ⭐ 8

Model development, deployment, and evaluation for forecasting Portal ecosystem dynamics

Tcgabiolinks Downloader ⭐ 8

GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package

Mapme.protectedareas ⭐ 8

Reproducible workflows in R for processing open geodata to create knowledge about KfW supported protected areas and conservation effectiveness.

Goodness-of-fit tests for functional data analysis. Software companion for "A goodness-of-fit test for the functional linear model with functional response"

An R package for reproducible research. Analyze your experimental data and generate HTML and PDF reports.

Alpine_shrub_experiment ⭐ 8

Australian Alpine shrub warming experiment and field surveys

📦 for custom file structure templates accessible in R sessions outside the ones they were created in.

Italianbiorday2012 ⭐ 7

Italian Bio R Day November 30 2012. Slides and Case Study from my talk on Reproducible Research

Software used in teaching time series financial econometrics

Targets Keras ⭐ 7

An example Keras pipeline with the targets R package

Manage your Computational Notebook Collections with Scikick

Source code for talk slides on reproducibility, research data management and open science

Rice Awd Shb ⭐ 6

A study of the effects of different water and nitrogen managements on sheath blight of rice.

Reproducible Science Workshop ⭐ 6

Material for a workshop on reproducible science with R and RStudio

Canvasxpress Js ⭐ 6

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

Tmleworkshop ⭐ 6

Targeted maximum likelihood estimation (TMLE) enables the integration of machine learning approaches in comparative effectiveness studies. It is a doubly robust method, making use of both the outcome model and propensity score model to generate an unbiased estimate as long as at least one of the models is correctly specified.

📷 R package that supports the analysis of images annotations 📷

Datautils ⭐ 5

R utilities useful for data-mining

Ctv Computational Environments ⭐ 5

A CRAN task view for computational environments and reproducibility

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