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379 search results found

Metaflow ⭐ 7,524

🚀 Build and manage real-life ML, AI, and data science projects with ease!

Knowledge Repo ⭐ 5,344

A next-generation curated knowledge sharing platform for data scientists and other technical professions.

Pytorch Vae ⭐ 5,292

A Collection of Variational Autoencoders (VAE) in PyTorch.

Sacred ⭐ 4,152

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

Nextflow ⭐ 2,447

A DSL for data-driven computational pipelines

FMA: A Dataset For Music Analysis

Reproducible Image Denoising State Of The Art ⭐ 1,759

Collection of popular and reproducible image denoising works.

Bayesian Neural Networks ⭐ 1,633

Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more

Evalai ⭐ 1,621

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Benchmark_vae ⭐ 1,597

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

Drake ⭐ 1,332

An R-focused pipeline toolkit for reproducibility and high-performance computing

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

Gtsummary ⭐ 892

Presentation-Ready Data Summary and Analytic Result Tables

Recsys2019_deeplearning_evaluation ⭐ 871

This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.

Targets ⭐ 860

Function-oriented Make-like declarative workflows for R

Torch Fidelity ⭐ 820

High-fidelity performance metrics for generative models in PyTorch

Stencila ⭐ 752

Programmable, reproducible, interactive documents

Weave.jl ⭐ 741

Scientific reports/literate programming for Julia

Opencpu ⭐ 690

OpenCPU system for embedded scientific computation and reproducible research

LibKGE - A knowledge graph embedding library for reproducible research

Disentangling Vae ⭐ 668

Experiments for understanding disentanglement in VAE latent representations

Axelrod ⭐ 632

A research tool for the Iterated Prisoner's Dilemma

Rrtools ⭐ 619

rrtools: Tools for Writing Reproducible Research in R

Gpu Jupyter ⭐ 618

GPU-Jupyter: Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.

papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

PyCIL: A Python Toolbox for Class-Incremental Learning

Itkwidgets ⭐ 571

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

Sionna: An Open-Source Library for Next-Generation Physical Layer Research

Labnotebook ⭐ 528

LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.

Showyourwork ⭐ 508

A workflow for reproducible and open scientific articles

Fullsubnet ⭐ 443

PyTorch implementation of "FullSubNet: A Full-Band and Sub-Band Fusion Model for Real-Time Single-Channel Speech Enhancement."

Framework for Analysis of Class-Incremental Learning with 12 state-of-the-art methods and 3 baselines.

Effortless method to record provenance in Python

Funflow ⭐ 364

Functional workflows

Pweave is a scientific report generator and a literate programming tool for Python. It can capture the results and plots from data analysis and works well with numpy, scipy and matplotlib.

Codebraid ⭐ 343

Live code in Pandoc Markdown

Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb

Neurodocker ⭐ 317

Generate custom Docker and Singularity images, and minimize existing containers

Huxtable ⭐ 307

An R package to create styled tables in multiple output formats, with a friendly, modern interface.

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

An R Pandoc Writer: Convert arbitrary R objects into markdown

Reprozip ⭐ 286

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Containerit ⭐ 285

Package an R workspace and all dependencies as a Docker container

Awesome Reproducible Research ⭐ 282

A curated list of reproducible research case studies, projects, tutorials, and media

Canvasxpress ⭐ 282

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

Future Gadget Laboratory

Use of an R package to facilitate reproducible research

Single Cell Papers With Code ⭐ 193

Papers with code for single cell related papers

Ten Rules Jupyter ⭐ 185

Ten Simple Rules for Writing and Sharing Computational Analyses in Jupyter Notebooks

Trackdown ⭐ 183

R package for collaborative writing and editing of R Markdown (or Sweave) documents in Google Docs.

Rep Res Book ⭐ 170

Source code files for the book Reproducible Research with R/RStudio

A Python API for working with Neurodata stored in the NWB Format

🐳 Containerize R Markdown documents for continuous reproducibility

Example Get Started ⭐ 160

Get started DVC project

Sunbeam ⭐ 157

A robust, extensible metagenomics pipeline

Grand Challenge.org ⭐ 156

A platform for end-to-end development of machine learning solutions in biomedical imaging

Desktop ⭐ 140

💻 Stencila on your desktop

Shournal ⭐ 139

Log shell-commands and used files. Snapshot executed scripts. Fully automatic.

Lightweight, Python library for fast and reproducible experimentation 🔬

Lamda Pilot ⭐ 134

🎉 PILOT: A Pre-trained Model-Based Continual Learning Toolbox

Seq2science ⭐ 132

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Tools4rr ⭐ 129

Materials for a one-credit course on reproducible research

Econ Project Templates ⭐ 128

Templates for reproducible economics projects

Datamaid ⭐ 128

An R package for data screening

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

R interface to the Open Science Framework (OSF)

Nilm Papers With Code ⭐ 119

An archive for NILM papers with source code and other supplemental material

Rmdtemplates ⭐ 119

Rmarkdown templates for reproducible science

REANA: Reusable research data analysis platform

Formr.org ⭐ 114

Chain simple surveys into longer runs to build complex studies. Use R to generate pretty feedback and complex designs.

Everware ⭐ 111

Everware is about re-useable science, it allows people to jump right in to your research code.

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

Reference implementations of popular Binarized Neural Networks

Awesome Open Science Software ⭐ 102

awesome open list of pointers about open science for software and computational science

Refcard Org Babel ⭐ 98

Org Babel reference card

Hash Embeddings ⭐ 93

PyTorch implementation of Hash Embeddings (NIPS 2017). Submission to the NIPS Implementation Challenge.

pytask is a workflow management system that facilitates reproducible data analyses.

Git2rdata ⭐ 91

An R package for storing and retrieving data.frames in git repositories.

Mimic Iv Data Pipeline ⭐ 90

A customizable pipeline for data extraction from MIMIC-IV.

Targets Tutorial ⭐ 90

Short course on the targets R package

Openml R ⭐ 90

R package to interface with OpenML

Jupyter Guide ⭐ 90

Guide for Reproducible Research and Data Science in Jupyter Notebooks

Porcupine ⭐ 89

Express parametrable, composable and portable data pipelines

Sartools ⭐ 87

Statistical Analysis of RNA-Seq Tools

Bacannot ⭐ 85

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Rr_webinars ⭐ 85

Series of webinars and documents on Reproducible Research

Tcpdbench ⭐ 82

The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data

R_tutorial_ed ⭐ 79

R Tutorial for Educational Data Users

Genetonic ⭐ 74

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Groundhog ⭐ 72

Reproducible R Scripts Via Date Controlled Installing & Loading of CRAN & Git Packages

Projectweek ⭐ 71

Website for NA-MIC Project Weeks

Analysis Flow ⭐ 70

Data Analysis Workflows & Reproducibility Learning Resources

CK repository with components and automation actions to enable portable workflows across diverse platforms including Linux, Windows, MacOS and Android. It includes software detection plugins and meta packages (code, data sets, models, scripts, etc) with the possibility of multiple versions to co-exist in a user or system environment.

Gittargets ⭐ 69

Data version control for reproducible analysis pipelines in R with {targets}.

🐶 (Re)constructing R computational environments

Fgmachine ⭐ 66

Future Gadget Machine

NIX + YAML for easy to use reproducible environments

Paper_template ⭐ 66

Template repository for research papers.

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

Biosimspace ⭐ 64

Code and resources for the EPSRC BioSimSpace project.

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