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Search results for python illumina

17 search results found

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Viral Ngs ⭐ 129

Viral genomics analysis pipelines

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

Sample Sheet ⭐ 45

Parse Illumina sample sheets with Python

ClairS - a deep-learning method for long-read somatic small variant calling

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

Rnaseq Pipeline ⭐ 18

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

S4 Clarity Lib ⭐ 16

A modern Python library for BaseSpace Clarity LIMS.

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

Human_genomics_pipeline ⭐ 15

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

Digestiflow Server ⭐ 13

🍸 Web-based database system for flow cell management (incl. REST API)

Chimerate ⭐ 12

A pipeline to detect chimeric transcripts derived from genes and transposable elements.

Snakemake based framework for NGS data analysis and management

Automated Tool for Global Screening Array analysis

Ampligone ⭐ 6

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

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