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Search results for python fmri
fmri
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python
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53 search results found
Nilearn
⭐
1,076
Machine learning for NeuroImaging in Python
Pycortex
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534
Pycortex is a python-based toolkit for surface visualization of fMRI data
Brainiak
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315
Brain Imaging Analysis Kit
Tedana
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149
TE-dependent analysis of multi-echo fMRI
Neurora
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130
A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)
Nltools
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116
Python toolbox for analyzing imaging data
Pynets
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111
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
Dyconnmap
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89
A dynamic connectome mapping module in python.
Neurovault
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88
Easy to use web database for statistical maps.
Teneto
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78
Temporal Network Tools
Visualqc
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68
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
Halfpipe
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56
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
Stagin
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55
STAGIN: Spatio-Temporal Attention Graph Isomorphism Network
Nichord
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53
Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib
Fmriflows
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42
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
Connectomemapper3
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39
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
Samri
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39
Small Animal Magnetic Resonance Imaging via Python.
Vae Gan Celeba
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38
Code and notebooks related to the paper: "Reconstructing Faces from fMRI Patterns using Deep Generative Neural Networks" by VanRullen & Reddy, 2019
Abcd Hcp Pipeline
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37
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
Ni Edu
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36
Student version of NI-edu courses
Load_confounds
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30
Load fMRIprep confounds in python
Actflowtoolbox
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29
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
Brainplotlib
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25
A lightweight package to plot brain surfaces with Python.
Pyhrf
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24
PyHRF is a set of tools to analyze fMRI data and specifically study hemodynamics.
Icon2017
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22
Repository for the ICON 2017 hackathon 'multivoxel pattern analysis (MVPA) of fMRI data in Python'
Miqa Phase1
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19
A web application for medical imaging quality assurance
Nibabies
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19
Processing tools for magnetic resonance images of infant brains
Rshrf
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19
Resting state HRF estimation from BOLD-fMRI signal
Gnuradio Grc Examples
⭐
18
This repository will have all my gnuradio exsamples
Bolt
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16
Fused Window Transformers for fMRI Time Series Analysis (https://www.sciencedirect.com/science/article/pii
Csg_mri_pipelines
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13
MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness
Junifer
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12
Forschungszentrum Jülich Neuroimaging Feature Extractor
Bids Tools
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11
Tools for dealing with neuroimaging data in the BIDS structure
Fmri_roi_analysis_tool
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10
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
Bold5000_autoencoder
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10
autoencoder trained on BOLD5000 dataset
Pypes
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9
Reusable neuroimaging pipelines using nipype
Sdc Bids Fmri
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9
fMRI Imaging Analysis
Fsub_extractor
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8
Software that functionally segments white matter connections to generate task-specific subcomponents of fiber bundles.
Hed Specification
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8
Specification documents for HED (Hierarchical Event Descriptors)
Aroma
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7
ICA-AROMA, as a Python package. A work in progress.
Synbold Disco
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7
Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
Hed Python
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7
Python validation, summary, and analysis tools for HED (Hierarchical Event Descriptors).
Machine Learning Portfolio
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7
Assorted machine learning implementations for medical data
Fmri Physio Log
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7
Parse Siemens PMU files
Asd_gp_gcn
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6
ASD diagnosis on ABIDE I
Headcase Pipeline
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6
A pipeline to generate subject-specific headcases for fMRI scanning
Functional Connectivity Analysis
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6
Brain Connectivity Analysis on FMRi data in a memory task performed at Baycrest Hospital
Hcp Utils
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6
Utilities to use HCP and HCP-like data with nilearn and other Python tools
Double Fusion
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6
A Bayesian Double Fusion Model for Resting-State Brain Connectivity Using Joint Functional and Structural Data
Pystatis
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5
Python implementation of STATIS for analysis of several data tables
Fmriprep_denoising
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5
Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-dependence, and temporal degree of freedom loss.
Multiecho
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5
Combine multiple-echoes from a multi-echo BOLD fMRI acquisition.
Pybold
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5
Semi-blind deconvolution for fMRI (BOLD signal)
Afniglmprep
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5
afniGLMprep is python code which prepares and runs GLMs on neuroimaging data stored in the BIDS format (http://bids.neuroimaging.io/). This is done via AFNI's 3dDeconvolve function.
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