Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for fmri
fmri
x
124 search results found
Nilearn
⭐
1,076
Machine learning for NeuroImaging in Python
Fmriprep
⭐
599
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Pycortex
⭐
534
Pycortex is a python-based toolkit for surface visualization of fMRI data
Brainiak
⭐
315
Brain Imaging Analysis Kit
Tapas
⭐
194
TAPAS - Translational Algorithms for Psychiatry-Advancing Science
Tedana
⭐
149
TE-dependent analysis of multi-echo fMRI
Canlabcore
⭐
135
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
Neurora
⭐
130
A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)
Nltools
⭐
116
Python toolbox for analyzing imaging data
Pynets
⭐
111
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
Braingraph
⭐
94
Graph theory analysis of brain MRI data
Dyconnmap
⭐
89
A dynamic connectome mapping module in python.
Neurovault
⭐
88
Easy to use web database for statistical maps.
Mmvt
⭐
80
The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data
Teneto
⭐
78
Temporal Network Tools
Bisweb
⭐
75
This is the repository for the BioImage Suite Web Project
Automaticanalysis
⭐
70
Automatic Analysis (aa)
Visualqc
⭐
68
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
Nifti.jl
⭐
64
Julia module for reading/writing NIfTI MRI files
Gift
⭐
57
Group ICA/IVA software (MATLAB)
Braineigenmodes
⭐
57
Code supporting 'Geometric constraints on human brain function'
Halfpipe
⭐
56
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
Stagin
⭐
55
STAGIN: Spatio-Temporal Attention Graph Isomorphism Network
Nichord
⭐
53
Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib
Spm
⭐
50
SPM (Statistical Parametric Mapping) - Development Version
Network_tda_tutorial
⭐
43
This repository is dedicated for the tutorial on network and topological neuroscience.
Advanced_fmri_course
⭐
43
List of ressources and practicals used for the fMRI data analysis course of UoB (UK) (2014-2017)
Fmriflows
⭐
42
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
Neural Nlp
⭐
41
[PNAS'21] The neural architecture of language: Integrative modeling converges on predictive processing
Nn Decoding
⭐
40
Brain decoding/encoding with neural network language models
Connectomemapper3
⭐
39
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
Samri
⭐
39
Small Animal Magnetic Resonance Imaging via Python.
Vae Gan Celeba
⭐
38
Code and notebooks related to the paper: "Reconstructing Faces from fMRI Patterns using Deep Generative Neural Networks" by VanRullen & Reddy, 2019
Abcd Hcp Pipeline
⭐
37
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
Ni Edu
⭐
36
Student version of NI-edu courses
Ecobidas
⭐
35
Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist
Matlabtfce
⭐
31
Standalone MATLAB implementation of permutation TFCE correction
Load_confounds
⭐
30
Load fMRIprep confounds in python
Abide Fmri
⭐
29
Repository for the Brainhack School 2020 team working with fMRI and ABIDE data to train machine learning models.
Actflowtoolbox
⭐
29
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
Brainsurfer
⭐
28
MATLAB toolbox for visualizing brain data on surfaces.
Automated Explanations
⭐
26
Explain a black-box module in natural language.
Brainplotlib
⭐
25
A lightweight package to plot brain surfaces with Python.
Online_neuroimaging_resources
⭐
24
a laundry list of resources for MRI, fMRI, EEG, MEG...
Niak
⭐
24
GNU Octave library for connectivity analysis in large fMRI datasets
Pyhrf
⭐
24
PyHRF is a set of tools to analyze fMRI data and specifically study hemodynamics.
Canlab_help_examples
⭐
24
How-to examples and a batch pipeline for second-level neuroimaging analysis. Batch scripts and examples publish HTML files with code and output.
Icon2017
⭐
22
Repository for the ICON 2017 hackathon 'multivoxel pattern analysis (MVPA) of fMRI data in Python'
Neuroml2020
⭐
20
Machine Learning in Neuroimaging data, Fall 2020.
Tvb Ukbb
⭐
20
TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline
Nibabies
⭐
19
Processing tools for magnetic resonance images of infant brains
Rshrf
⭐
19
Resting state HRF estimation from BOLD-fMRI signal
Miqa Phase1
⭐
19
A web application for medical imaging quality assurance
Deep_learning_fmri_eeg
⭐
18
Implementation of deep learning models in decoding fMRI/EEG data in a context of semantic processing
Fit
⭐
18
Fusion ICA Toolbox (MATLAB)
Gnuradio Grc Examples
⭐
18
This repository will have all my gnuradio exsamples
Bolt
⭐
16
Fused Window Transformers for fMRI Time Series Analysis (https://www.sciencedirect.com/science/article/pii
Spm Docs
⭐
15
SPM Documentation
Neuroscout
⭐
14
NeuroScout web app and API
Bspm
⭐
14
Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12
Xdf
⭐
14
xDF estimates variance of Pearson's correlations among highly autocorrelated time series.
Spatio Temporal Brain
⭐
13
A Deep Graph Neural Network Architecture for Modelling Spatio-temporal Dynamics in rs-fMRI Data
Csg_mri_pipelines
⭐
13
MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness
Junifer
⭐
12
Forschungszentrum Jülich Neuroimaging Feature Extractor
Rmvpa
⭐
12
Multivoxel Pattern Analysis in R
Bids Tools
⭐
11
Tools for dealing with neuroimaging data in the BIDS structure
Beira
⭐
11
BEIRA: BOLD from EEG Interpretable Regression Autoencoder. Prediction subcortical BOLD activity from EEG data
Mind18_rsa_tutorial
⭐
11
Tutorial on representational similarity analysis for MIND 2018
Cpp_ptb
⭐
11
a set of function to make it easier to create behavioral, EEG, fMRI experiment with psychtoolbox
Conn_tools
⭐
11
Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox
Fetal Code
⭐
11
Automated Preprocessing Pipeline for Fetal Resting-State fMRI Data
Budapest Fmri Data
⭐
10
Quality assurance analyses of fMRI data collected while participants watched The Grand Budapest Hotel by Wes Anderson.
Fmri_roi_analysis_tool
⭐
10
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
Bold5000_autoencoder
⭐
10
autoencoder trained on BOLD5000 dataset
Hcp Snippets
⭐
10
Simple and brief walkthroughs to help grad students/new users complete basic tasks with workbench command and common HCP pipeline output files.
Kul_nis
⭐
10
KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.
Brainconn
⭐
10
A Python implementation of the brain connectivity toolbox.
Friendengine
⭐
10
FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC repository
Fmx.pickers.helper
⭐
9
[FireMonkey] FMX.Pickers.Helper - helper for create native Pickers
Pypes
⭐
9
Reusable neuroimaging pipelines using nipype
Sdc Bids Fmri
⭐
9
fMRI Imaging Analysis
Hed Specification
⭐
8
Specification documents for HED (Hierarchical Event Descriptors)
Thesis
⭐
8
PhD thesis manuscript
Nbs_benchmarking
⭐
8
Expanded NBS tools for new statistics and benchmarking
Fsub_extractor
⭐
8
Software that functionally segments white matter connections to generate task-specific subcomponents of fiber bundles.
Json2delphirecord
⭐
8
[FireMonkey] make records from json data
Dvars
⭐
8
Insight & Inference for DVARS: 3-part variance decomposition, gives units & p-values to DVARS measures as well as spatiotemporal rs-fMRI diagnostic.
Hed Python
⭐
7
Python validation, summary, and analysis tools for HED (Hierarchical Event Descriptors).
Synbold Disco
⭐
7
Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
Aroma
⭐
7
ICA-AROMA, as a Python package. A work in progress.
Fmri Physio Log
⭐
7
Parse Siemens PMU files
Machine Learning Portfolio
⭐
7
Assorted machine learning implementations for medical data
Bids_cookbook
⭐
7
A simple recipe to convert your neuroimaging data into a BIDS dataset.
Braineigenmodes_legacy
⭐
7
Code supporting 'Geometric constraints on human brain function'
Fmri_denoising
⭐
7
Collection of Matlab functions for denoising fMRI data
Retinotopy
⭐
6
All-in-one package of the retinotopy (phase-encoded, pRF, and multifocal) 2D/3D/object-image stimuli
Neurosynth_semantic_map
⭐
6
A repository for "The Latent Semantic Space and Corresponding Brain Regions of the Functional Neuroimaging Literature" -- http://www.biorxiv.org/content/early/2017/07/20/15
Bayesfactorfmri
⭐
6
BayesFactorFMRI is a tool developed with R and Python to allow neuroimaging researchers to conduct Bayesian second-level analysis of fMRI data and Bayesian meta-analysis of fMRI images with multiprocessing.
Predictive_modeling_reliability_hcp
⭐
6
Supporting code for https://www.biorxiv.org/content/10.1101/796714v4
Oppni
⭐
6
Optimization of Preprocessing Pipelines for NeuroImaging (OPPNI) for fMRI preprocessing
1-100 of 124 search results
Next >
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.