Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for plasmid
plasmid
x
24 search results found
Poly
⭐
620
A Go package for engineering organisms.
Bakta
⭐
365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Seqviz
⭐
191
a JavaScript DNA, RNA, and protein sequence viewer
Platon
⭐
93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Mob Suite
⭐
90
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Plasflow
⭐
61
Software for prediction of plasmid sequences in metagenomic assemblies
Recycler
⭐
41
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33 by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
Queen
⭐
31
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
Plsdb
⭐
29
PLSDB pipeline to collect bacterial plasmids from NCBI
Plasmidid
⭐
22
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Isfinder Sequences
⭐
22
Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)
Tiptoft
⭐
20
Predict plasmids from uncorrected long read data
Tadrep
⭐
18
Targeted Detection and Reconstruction of Plasmids
Synbio
⭐
15
a DNA assembly library
Mobileog Db
⭐
15
code repo for mobileOG-db
Cenote Taker
⭐
14
DEPRECATED: Use Cenote-Taker 3 instead
Patlas
⭐
13
Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:
Plasforest
⭐
10
A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
Repp
⭐
10
Repository-based plasmid design
Moclo
⭐
10
Modular cloning simulation with the MoClo framework in Python
Plascad
⭐
6
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
Plasmidpicker
⭐
5
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
Plasmidhunter
⭐
5
This tool predicts plasmid sequences from genomic and metagenomic assemblies using machine learning.
Plasmer
⭐
5
An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
Related Searches
Python Plasmid (18)
Bioinformatics Plasmid (12)
Assembly Plasmid (11)
Fasta Plasmid (7)
Dna Plasmid (7)
Plasmid Metagenomes (5)
1-24 of 24 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.