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Search results for python plasmid
plasmid
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python
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7 search results found
Bakta
⭐
365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Platon
⭐
93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Mob Suite
⭐
90
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Plasflow
⭐
61
Software for prediction of plasmid sequences in metagenomic assemblies
Recycler
⭐
41
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33 by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
Queen
⭐
31
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
Plsdb
⭐
29
PLSDB pipeline to collect bacterial plasmids from NCBI
Tiptoft
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20
Predict plasmids from uncorrected long read data
Tadrep
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18
Targeted Detection and Reconstruction of Plasmids
Mobileog Db
⭐
15
code repo for mobileOG-db
Synbio
⭐
15
a DNA assembly library
Moclo
⭐
10
Modular cloning simulation with the MoClo framework in Python
Plasforest
⭐
10
A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
Plascad
⭐
6
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
Plasmidpicker
⭐
5
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
Plasmidhunter
⭐
5
This tool predicts plasmid sequences from genomic and metagenomic assemblies using machine learning.
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