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Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Mob Suite ⭐ 90

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

Plasflow ⭐ 61

Software for prediction of plasmid sequences in metagenomic assemblies

Recycler ⭐ 41

This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33 by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir

Plasmidid ⭐ 22

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

a DNA assembly library

Repository-based plasmid design

Modular cloning simulation with the MoClo framework in Python

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