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Search results for pipeline illumina
illumina
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pipeline
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11 search results found
Ampliseq
⭐
141
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Viral Ngs
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129
Viral genomics analysis pipelines
Viralrecon
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101
Assembly and intrahost/low-frequency variant calling for viral samples
Taxprofiler
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78
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Mpgap
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51
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Demultiplex
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31
Demultiplexing pipeline for sequencing data
Ngs Preprocess
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23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Rnaseq Pipeline
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18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Rmap
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15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
Human_genomics_pipeline
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15
A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Assnake
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10
Snakemake based framework for NGS data analysis and management
Slim
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6
A web app for environmental DNA metabarcoding analysis
Nxf Bcl
⭐
5
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
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