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Search results for pan genome
pan-genome
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24 search results found
Minigraph
⭐
367
Proof-of-concept seq-to-graph mapper and graph generator
Ppanggolin
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191
Build a partitioned pangenome graph from microbial genomes
Get_homologues
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98
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Pangraph
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72
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Scoary
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71
Pan-genome wide association studies
Panphlan
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39
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
Panache
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34
Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.
Panaligner
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33
Long read aligner for cyclic and acyclic pangenome graphs
Panseq
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31
Pan-genomic sequence analysis
Pangenome
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28
Renders a collection of sequences into a pangenome graph.
Panpop
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24
Application of pan-genome for population
Pancat
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24
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
Strainflair
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23
Strain-level abundances estimation in metagenomic samples using variation graphs
Pan Zea_construct
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21
Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
Pagoo
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15
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
Ppspcp
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13
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
Superpang
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9
Non-redundant pangenome assemblies from multiple genomes or bins
Sopang
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9
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
Pangenome_workflow
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6
luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, and finally perform pangenome analysis(roary).
Panz Sv Pipe
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6
Structure variants calling and genotyping scripts for pan-Zea
Bactprep
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6
Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
Bovine Graphs
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6
Integrate multiple genome assemblies into a pangenome graph
Pangloss
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6
Pangenome analysis of eukaryotes.
Rdxon
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5
Reference-free FASTQ filter for rare germline and somatic variants
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1-24 of 24 search results
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