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2 search results found

Minigraph ⭐ 367

Proof-of-concept seq-to-graph mapper and graph generator

Ppanggolin ⭐ 191

Build a partitioned pangenome graph from microbial genomes

Pangraph ⭐ 72

A bioinformatic toolkit to align genome assemblies into pangenome graphs

Panphlan ⭐ 38

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples

Application of pan-genome for population

A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.

Superpang ⭐ 9

Non-redundant pangenome assemblies from multiple genomes or bins

SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.

Bovine Graphs ⭐ 6

Integrate multiple genome assemblies into a pangenome graph

Pangenome analysis of eukaryotes.

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