Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Sunbeam | 157 | 4 months ago | 14 | HTML | ||||||
A robust, extensible metagenomics pipeline | ||||||||||
Kraken2_classification | 54 | a year ago | 2 | Python | ||||||
Snakemake workflow for metagenomic classification with Kraken2 | ||||||||||
Metameta | 18 | 5 years ago | 3 | other | Python | |||||
Metasub_cap | 16 | 4 years ago | 8 | mit | Python | |||||
A comprehensive pipeline for short read metagenomic data | ||||||||||
Bohra | 12 | 3 years ago | 52 | March 09, 2021 | 10 | gpl-3.0 | Python | |||
A pipeline for bioinformatics analysis of bacterial genomes | ||||||||||
Findfungi | 7 | 3 years ago | 2 | Python | ||||||
A pipeline for the identification of fungi in public metagenomics datasets | ||||||||||
Pangenome_workflow | 6 | 5 months ago | Python | |||||||
luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, and finally perform pangenome analysis(roary). | ||||||||||
Babykraken | 5 | 5 years ago | gpl-3.0 | |||||||
👶🦑 Very small Kraken2 database for bundling with pipelines |