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Ppanggolin ⭐ 191

Build a partitioned pangenome graph from microbial genomes

Pan-genome wide association studies

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

Strainflair ⭐ 23

Strain-level abundances estimation in metagenomic samples using variation graphs

Superpang ⭐ 9

Non-redundant pangenome assemblies from multiple genomes or bins

Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)

Pangenome_workflow ⭐ 6

luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, and finally perform pangenome analysis(roary).

Bovine Graphs ⭐ 6

Integrate multiple genome assemblies into a pangenome graph

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