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Search results for obofoundry
obofoundry
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127 search results found
Ontogpt
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435
LLM-based ontological extraction tools, including SPIRES
Humandiseaseontology
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315
Repository for the Human Disease Ontology.
Human Phenotype Ontology
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269
Ontology for the description of human clinical features
Robot
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240
ROBOT is an OBO Tool
Pronto
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212
A Python frontend to (Open Biomedical) Ontologies.
Mondo
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203
Mondo Disease Ontology
Ontology Development Kit
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202
Bootstrap an OBO Library ontology
Go Ontology
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200
Source ontology files for the Gene Ontology
Bfo
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184
BFO repository including source code and latest documents
Foodon
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162
The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.
Biolink Model
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149
Schema and generated objects for biolink data model and upper ontology
Obofoundry.github.io
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140
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
Cell Ontology
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126
An ontology of cell types
Uberon
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126
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
Sssom
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124
Simple Standard for Sharing Ontology Mappings
Envo
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121
A community-driven ontology for the representation of environments
Pheknowlator
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116
PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
Ontobio
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114
python library for working with ontologies and ontology associations
Ols
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90
Ontology Lookup Service from SPOT at EBI
Ontology Access Kit
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89
Ontology Access Kit: A python library and command line application for working with ontologies
So Ontologies
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83
Collect of SO Ontologies
Obo Relations
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83
RO is an ontology of relations for use with biological ontologies
Obook
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74
OBO Organized Knowledge: Training materials for becoming an OBO engineer
Upheno
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72
The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
Obi
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68
The Ontology for Biomedical Investigations
Purl.obolibrary.org
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67
A system for managing OBO PURLs
Omop2obo
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58
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
Obographs
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58
Basic and Advanced OBO Graphs: specification and reference implementation
Pato
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56
PATO - the Phenotype And Trait Ontology
Iao
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54
information artifact ontology
Plant Ontology
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53
Repository for the Plant Ontology
Pyobo
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50
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
Duo
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48
Ontology for consent codes and data use requirements
Sepio Ontology
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44
Ontology for representing scientific evidence and provenance information
Agro
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42
AgrO describes agronomic practices, techniques, and variables used in agronomic experiments.
Maxo
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41
Medical action ontology
Evidenceontology
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41
Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.
Dead_simple_owl_design_patterns
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40
A simple system for specifying OWL class design patterns for OBO-ish ontologies.
Emotion Ontology
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40
Ontology for emotions and affective phenomena
Koza
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38
Data transformation framework for LinkML data models
Sssom Py
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38
Python toolkit for SSSOM mapping format
Gsso
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37
GSSO is the Gender, Sex, and Sex Orientation ontology, including terms related to gender identity and expression, sexual and romantic identity and orientation, and sexual and reproductive behavior.
Ubergraph
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34
Integrated OBO ontology store
Symptomontology
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34
The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance reported by a patient indicative of a disease”. Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it’s scope to capture and document in a more robust manor these two sets of terms. Understanding that at times, the same term may be both a Sign and a Symp
Plant Trait Ontology
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33
Explore the Plant Trait Ontology on the Planteome site.
Semantic Sql
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32
SQL and SQLite builds of OWL ontologies
Cob
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32
An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
Rxno
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30
Name Reaction Ontology
Environmental Exposure Ontology
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30
Modular environmental exposures ontology
Shapes Of You
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28
💠 An index for linked open data & standard knowledge descriptions (ontologies, vocabularies, shapes, queries, mappings)
Psi Ms Cv
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25
HUPO-PSI mass spectrometry CV
Boomer
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24
Bayesian OWL ontology merging
Ncbitaxon
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24
Build for NCBITaxon
Bio Attribute Ontology
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24
source files for OBA (Ontology of Biological Attributes)
Fastobo Py
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23
Faultless AST for Open Biomedical Ontologies in Python.
Behavior Ontology
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23
Neuro Behaviour Ontology: an ontology for human and animal behaviour processes and behaviour phenotypes
Obographviz
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22
Customizable translation of OBO graphs to dot for visualization using graphviz and other tools
Thesaurus Obo Edition
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22
OBO Library edition of NCIt
Kg Obo
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21
A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
Fastobo
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20
Faultless AST for Open Biomedical Ontologies.
Cido
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20
CIDO: Coronavirus Infectious Disease Ontology
Curate Gpt
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20
LLM-driven curation assist tool (pre-alpha)
Mental Functioning Ontology
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19
Ontology for all aspects of human mental functioning
Hpo Translations
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19
Internationalisation of the HPO content
Mammalian Phenotype Ontology
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19
Standard terms for annotating mammalian phenotypic data
Clo
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18
Communitiy-based Cell Line Ontology
Swo
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18
The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, licences, provenance and associated data.
Drosophila Anatomy Developmental Ontology
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18
The home of the Drosophila anatomy ontology
Stato
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17
This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:
Unit Ontology
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17
An ontology of units of measurements
Ogms
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17
Automatically exported from code.google.com/p/ogms
Obo Dashboard
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17
Summary Dashboard for Open Biological and Biomedical Ontologies
Curies
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16
🐸 Idiomatic conversion between URIs and compact URIs (CURIEs)
Genepio
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15
The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne infectious disease surveillance and outbreak investigations.
Aro
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15
The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of an antibiotic
Dosdp Tools
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15
Utility for working with DOSDP design patterns and OWL ontologies
Vo
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14
Vaccine Ontology
Fypo
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14
Fission Yeast Phenotype Ontology
Bco
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14
Biological Collections Ontology
Contributor Role Ontology
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13
This ontology provides contribution roles for use in crediting persons or organizations.
Omrse
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13
The Ontology for Modeling and Representation of Social Entities
Ecocore
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13
An ontology of core ecological entities
Dideo
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13
The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology (DIDEO)
Pco
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12
An ontology about groups of interacting organisms such as populations and communities
Foodbiomarkerontology
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12
🚀 Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology
Biobanking
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12
Ontology for Biobanking
Plant Stress Ontology
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12
An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Ontology of Plant Stress
Rsc Cmo
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12
Chemical Methods Ontology
Cdno
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11
Compositional Dietary Nutrition Ontology
Biological Spatial Ontology
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11
An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces
Monochrom
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10
Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
C Elegans Phenotype Ontology
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10
Ontology for phenotypes pertaining to the nematode Caenorhabditis elegans and related nematodes used by the nematode genome database WormBase
Semanticchemistry
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10
Chemical Information Ontology
Proteinontology
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10
Aism
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10
This repository contains the ontology for the Anatomy of the Insect SkeletoMuscular system (AISM), which contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research.
Nomen
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10
A nomenclatural ontology for names (not concepts).
Cdao
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9
Comparative Data Analysis Ontology - A formalization of concepts and relations relevant to evolutionary comparative analysis
Xenopus Phenotype Ontology
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9
XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and X. tropicalis.
Flybase Controlled Vocabulary
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9
The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
Zebrafish Phenotype Ontology
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9
A vocabulary for describing Zebrafish Phenotypes
Related Searches
Ontology Obofoundry (67)
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Makefile Obofoundry (38)
Python Obofoundry (36)
Obofoundry Obo (24)
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