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Search results for python obofoundry

35 search results found

A Python frontend to (Open Biomedical) Ontologies.

The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.

Biolink Model ⭐ 149

Schema and generated objects for biolink data model and upper ontology

Obofoundry.github.io ⭐ 140

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

Simple Standard for Sharing Ontology Mappings

Pheknowlator ⭐ 116

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

Ontobio ⭐ 114

python library for working with ontologies and ontology associations

Ontology Access Kit ⭐ 89

Ontology Access Kit: A python library and command line application for working with ontologies

The Ontology for Biomedical Investigations

Purl.obolibrary.org ⭐ 67

A system for managing OBO PURLs

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

AgrO describes agronomic practices, techniques, and variables used in agronomic experiments.

Sssom Py ⭐ 38

Python toolkit for SSSOM mapping format

Data transformation framework for LinkML data models

Plant Trait Ontology ⭐ 33

Explore the Plant Trait Ontology on the Planteome site.

Semantic Sql ⭐ 32

SQL and SQLite builds of OWL ontologies

Psi Ms Cv ⭐ 25

HUPO-PSI mass spectrometry CV

Ncbitaxon ⭐ 24

Build for NCBITaxon

Fastobo Py ⭐ 23

Faultless AST for Open Biomedical Ontologies in Python.

A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub

Obo Dashboard ⭐ 17

Summary Dashboard for Open Biological and Biomedical Ontologies

🐸 Idiomatic conversion between URIs and compact URIs (CURIEs)

The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne infectious disease surveillance and outbreak investigations.

The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology (DIDEO)

Foodbiomarkerontology ⭐ 12

🚀 Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology

Monochrom ⭐ 10

Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species

Zebrafish Phenotype Ontology ⭐ 9

A vocabulary for describing Zebrafish Phenotypes

Prefixmaps ⭐ 8

Semantic prefix map registry

The MHC Restriction Ontology

Psi Mod Cv ⭐ 7

Reactivated PSI-MOD ontology for molecular mass modifications

Brain_data_standards_ontologies ⭐ 7

A repository for co-ordinating work on ontologies for the Brain Data Standards Project

Informed Consent Ontology

XAO represents the anatomy and development of the African frogs Xenopus laevis and X. tropicalis.

🎬 Ontology Quality Assesment Toolkit

Sparqlfun ⭐ 5

sparql templates for linkml (alpha)

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