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A pipeline to investigate horizontal gene transfer from NGS data

Taxtriage ⭐ 11

TaxTriage is designed in concordance with CDC recommendations to provide clinical environments the necessary tools to generate classification reports (using Kraken2) in a metagenomics scope. It is bundled with Nextflow to provide a seamless installation and usage experience. It is currently being developed as an alpha version and is intended for a full release by October of 2022

Nxf Fastqc ⭐ 5

A simple fastp-MultiQC nextflow pipeline

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