Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for neuroimaging
neuroimaging
x
355 search results found
Mne Python
⭐
2,449
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
Slicer
⭐
1,339
Multi-platform, free open source software for visualization and image computing.
Dltk
⭐
1,293
Deep Learning Toolkit for Medical Image Analysis
Ants
⭐
1,107
Advanced Normalization Tools (ANTs)
Nilearn
⭐
1,076
Machine learning for NeuroImaging in Python
Awesome Neuroscience
⭐
974
A curated list of awesome neuroscience libraries, software and any content related to the domain.
Slicergitsvnarchive
⭐
883
Multi-platform, free open source software for visualization and image computing.
Fieldtrip
⭐
782
The MATLAB toolbox for MEG, EEG and iEEG analysis
Dcm2niix
⭐
746
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
Nipype
⭐
707
Workflows and interfaces for neuroimaging packages
Dipy
⭐
647
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Braindecode
⭐
638
Deep learning software to decode EEG, ECG or MEG signals
Fmriprep
⭐
599
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Nibabel
⭐
598
Python package to access a cacophony of neuro-imaging file formats
Pycortex
⭐
534
Pycortex is a python-based toolkit for surface visualization of fMRI data
Freesurfer
⭐
509
Neuroimaging analysis and visualization suite
Nipy
⭐
361
Neuroimaging in Python FMRI analysis package
Brainiak
⭐
315
Brain Imaging Analysis Kit
Mriqc
⭐
275
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Intensity Normalization
⭐
272
normalize the intensities of various MR image modalities
Applesiliconforneuroimaging
⭐
246
Review the challenges and potential of ARM-based Apple Silicon macOS for brain imaging research
Bids Starter Kit
⭐
245
Collection of tutorials, wikis, and templates to get you started with creating BIDS compliant datasets
Bids Specification
⭐
235
Brain Imaging Data Structure (BIDS) Specification
Pysurfer
⭐
229
Cortical neuroimaging visualization in Python
Brainchop
⭐
208
Brainchop: In-browser 3D MRI rendering and segmentation
Clinica
⭐
201
Software platform for clinical neuroimaging studies
Neuromaps
⭐
193
A toolbox for comparing brain maps
Neuromorphic Computing Guide
⭐
191
Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.
Nimare
⭐
166
Coordinate- and image-based meta-analysis in Python
Bids Examples
⭐
152
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
Tedana
⭐
149
TE-dependent analysis of multi-echo fMRI
Clinicadl
⭐
146
Framework for the reproducible processing of neuroimaging data with deep learning methods
Dcm2bids
⭐
146
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
Nobrainer
⭐
139
A framework for developing neural network models for 3D image processing.
Awesome Deepneuroimage
⭐
139
A curated list of awesome deep learning applications in the field of neurological image analysis
Canlabcore
⭐
135
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
Loris
⭐
134
LORIS is a web-accessible database solution for longitudinal multi-site studies.
Livianet
⭐
133
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
Brainspace
⭐
125
BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
Smriprep
⭐
111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
Bidscoin
⭐
110
BIDScoin converts your source-level neuroimaging data to BIDS
Mne Bids
⭐
110
MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.
Expyriment
⭐
109
Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments
Pyprep
⭐
106
A Python implementation of the Preprocessing Pipeline (PREP) for EEG data
Enigma
⭐
101
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
Neuropredict
⭐
99
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
Nipype_tutorial
⭐
97
Learn Nipype with these tutorial notebooks - go here to see them online -->
Neuroimaging_pattern_masks
⭐
95
Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
Brainbox
⭐
94
BrainBox is a web application that lets you annotate and segment 3D brain imaging data in real time, collaboratively.
Braingraph
⭐
94
Graph theory analysis of brain MRI data
Pcntoolkit
⭐
91
Toolbox for normative modelling and spatial inference of neuroimaging data. https://pcntoolkit.readthedocs.io/en/latest/
Openneuro
⭐
91
A free and open platform for analyzing and sharing neuroimaging data
Deepneuro
⭐
90
A deep learning python package for neuroimaging data. Made by:
Dyconnmap
⭐
89
A dynamic connectome mapping module in python.
Hitchhackers_guide_brain
⭐
86
A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG
Ica Aroma
⭐
84
ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
Niworkflows
⭐
81
Common workflows for MRI (anatomical, functional, diffusion, etc)
Dartbrains
⭐
80
This repository is a Python package with all of the functions and python libraries required for the Dartmouth fMRI Analysis Course taught by Prof Luke Chang, PhD.
Mmvt
⭐
80
The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data
Nitorch
⭐
78
Neuroimaging in PyTorch
Homer3
⭐
75
MATLAB application for fNIRS data processing and visualization
Automaticanalysis
⭐
70
Automatic Analysis (aa)
Micapipe
⭐
69
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
Visualqc
⭐
68
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
Slicerdmri
⭐
65
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
Nifti Image Converter
⭐
64
🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users
Dmipy
⭐
64
The open source toolbox for reproducible diffusion MRI-based microstructure estimation
Bioexplorer
⭐
61
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
Dmriprep
⭐
61
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Micaopen
⭐
58
Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
Templateflow
⭐
58
The TemplateFlow Archive - A DataLad super-dataset
Bidskit
⭐
57
Utility functions for working with DICOM and BIDS neuroimaging data
Whitematteranalysis
⭐
56
White matter tractography clustering and more...
Halfpipe
⭐
56
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
Nighres
⭐
55
Processing tools for high-resolution neuroimaging
Stagin
⭐
55
STAGIN: Spatio-Temporal Attention Graph Isomorphism Network
Porcupine
⭐
54
Visual programming for neuroimaging analysis
Niwidgets
⭐
53
Neuroimaging widgets for jupyter notebooks
Extensionsindex
⭐
52
Slicer extensions index
Spm
⭐
50
SPM (Statistical Parametric Mapping) - Development Version
Scona
⭐
50
Code to analyse structural covariance brain networks using python.
Fsbrain
⭐
50
R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.
Bspmview
⭐
49
MATLAB program for viewing 3D fMRI statistical images
Connectomeviewer
⭐
48
Software Application for the Visualization and Analysis of Multi-Modal Multi-Scale Network and Neuroimaging Data with Python
Mindcontrol
⭐
48
MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:
Netneurotools
⭐
47
Useful tools from the Network Neuroscience Lab
Bids Matlab
⭐
47
MATLAB / Octave tools for BIDS datasets
Bidsonym
⭐
47
a BIDS app for pseudo-anonymization of neuroimaging data
Neuromorph
⭐
46
The NeuroMorph analysis and visualization toolkit
Spm12
⭐
46
analysis of brain imaging data sequences
Advanced_fmri_course
⭐
43
List of ressources and practicals used for the fMRI data analysis course of UoB (UK) (2014-2017)
Network_tda_tutorial
⭐
43
This repository is dedicated for the tutorial on network and topological neuroscience.
Fmriflows
⭐
42
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
Sepia
⭐
41
Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
Kaggle Trends 3rd Place Solution
⭐
40
the 3rd place solution code of Kaggle TReNDS Neuroimaging (https://www.kaggle.com/c/trends-assessment-predic
Coinstac
⭐
40
Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation
Dyneusr
⭐
40
Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)
Samri
⭐
39
Small Animal Magnetic Resonance Imaging via Python.
Neurora
⭐
38
A Python Toolbox for Multimode Neural Data Representation Analysis
Ibis
⭐
38
Official repository of the Ibis Neuronav platform
1-100 of 355 search results
Next >
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.