Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for nanopore sequencing
nanopore-sequencing
x
35 search results found
Nanosim
⭐
196
Nanopore sequence read simulator
Mag
⭐
164
Assembly and binning of metagenomes
Bambu
⭐
150
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Xpore
⭐
122
Identification of differential RNA modifications from nanopore direct RNA sequencing
Taiyaki
⭐
102
Training models for basecalling Oxford Nanopore reads
Deepsignal
⭐
98
Detecting methylation using signal-level features from Nanopore sequencing reads
Arcs
⭐
86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Master_of_pores
⭐
77
Nextflow pipeline for analysis of direct RNA Nanopore reads
Deepsimulator
⭐
76
The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
Rna Bloom
⭐
66
🌺 reference-free transcriptome assembly for short and long reads
Wub
⭐
52
Tools and software library developed by the ONT Applications group
Bacass
⭐
47
Simple bacterial assembly and annotation pipeline
Deepsignal Plant
⭐
46
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
Nanor
⭐
38
Nanopore data analysis in R
Pipeline Nanopore Ref Isoforms
⭐
35
Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools
Igenomics
⭐
26
The first app for Mobile DNA Sequence Alignment and Analysis
Nanome
⭐
23
NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
Rawhash
⭐
23
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39
Lrbinner
⭐
22
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
Score Assemblies
⭐
20
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
Tidehunter
⭐
17
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Rmetl
⭐
16
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
Ont Assembly Snake
⭐
16
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
Mgse
⭐
16
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Nanorepeat
⭐
13
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Guppy_on_slurm
⭐
10
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
Sv Ont Tibetan
⭐
8
Characterization of Structural Variation in Chinese samples
Guppy_parameter_optimiser
⭐
7
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
Nanotail
⭐
6
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
Deepmod2
⭐
6
DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
Clusterv
⭐
5
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
Slow5 Rs
⭐
5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
Ninetails
⭐
5
An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
Nanoflow
⭐
5
Bioinformatics pipeline for nanopore sequencing data
Reorientexpress
⭐
5
Transcriptome long-read orientation with Deep Learning
Related Searches
Python Nanopore Sequencing (21)
Bioinformatics Nanopore Sequencing (15)
Genome Nanopore Sequencing (7)
Pipeline Nanopore Sequencing (7)
1-35 of 35 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.