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Search results for bioinformatics nanopore sequencing
bioinformatics
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nanopore-sequencing
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15 search results found
Mag
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164
Assembly and binning of metagenomes
Deepsignal
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98
Detecting methylation using signal-level features from Nanopore sequencing reads
Arcs
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86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Deepsignal Plant
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46
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
Rawhash
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23
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39
Nanome
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23
NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
Lrbinner
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22
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
Score Assemblies
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20
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
Ont Assembly Snake
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16
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
Nanorepeat
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13
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Nanotail
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6
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
Nanoflow
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5
Bioinformatics pipeline for nanopore sequencing data
Ninetails
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5
An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
Slow5 Rs
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5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
Clusterv
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5
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
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