Project Name	Stars	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Deepvariant	2,978		5 months ago			8	bsd-3-clause	Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Nucleus	675	2	3 years ago	18	August 31, 2021	1	other	C++
Python and C++ code for reading and writing genomics data.
Gcp Essentials	208		3 months ago				apache-2.0	Jupyter Notebook
Sample code and notes for my GCP courses on LinkedIn Learning
Janggu	205		3 years ago	19	August 04, 2020		gpl-3.0	Jupyter Notebook
Deep learning infrastructure for genomics
Deepecg	187		a year ago				mit	Python
ECG classification programs based on ML/DL methods
Diffxpy	157		a year ago			104	bsd-3-clause	Python
Differential expression analysis for single-cell RNA-seq data.
Clairvoyante	142		3 years ago				bsd-3-clause	Python
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
Deepsignal	98		a year ago	11	March 31, 2022	12	gpl-3.0	Python
Detecting methylation using signal-level features from Nanopore sequencing reads
Cell_blast	74		9 months ago	8	February 08, 2023	5	mit	Python
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
Molgraph	34		5 months ago	37	November 27, 2023	5	mit	Python
Graph neural networks for molecular machine learning. Implemented and compatible with TensorFlow and Keras.

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Deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

most recent commit 5 months ago

Nucleus ⭐ 675

Python and C++ code for reading and writing genomics data.

dependent packages 2total releases 18most recent commit 3 years ago

Gcp Essentials ⭐ 208

Sample code and notes for my GCP courses on LinkedIn Learning

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Janggu ⭐ 205

Deep learning infrastructure for genomics

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Deepecg ⭐ 187

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Diffxpy ⭐ 157

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Clairvoyante ⭐ 142

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

most recent commit 3 years ago

Deepsignal ⭐ 98

Detecting methylation using signal-level features from Nanopore sequencing reads

total releases 11most recent commit a year ago

Cell_blast ⭐ 74

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

total releases 8most recent commit 9 months ago

Molgraph ⭐ 34

Graph neural networks for molecular machine learning. Implemented and compatible with TensorFlow and Keras.

total releases 37most recent commit 5 months ago

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Deepsignal vs Deepvariant

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Deepsignal vs Clairvoyante

Deepsignal vs Cell_blast

Deepsignal vs Molgraph

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