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Search results for python nanopore sequencing

nanopore-sequencing x

17 search results found

Nanosim ⭐ 196

Nanopore sequence read simulator

Identification of differential RNA modifications from nanopore direct RNA sequencing

Taiyaki ⭐ 102

Training models for basecalling Oxford Nanopore reads

Deepsignal ⭐ 98

Detecting methylation using signal-level features from Nanopore sequencing reads

Tools and software library developed by the ONT Applications group

Deepsignal Plant ⭐ 46

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

Pipeline Nanopore Ref Isoforms ⭐ 35

Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools

NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

Lrbinner ⭐ 22

LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.

Score Assemblies ⭐ 20

Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)

Ont Assembly Snake ⭐ 16

Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Nanorepeat ⭐ 13

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

Reorientexpress ⭐ 5

Transcriptome long-read orientation with Deep Learning

ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data

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