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4 search results found

Squeezemeta ⭐ 308

A complete pipeline for metagenomic analysis

Assembly and binning of metagenomes

Metacache ⭐ 49

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.

Plasmidpicker ⭐ 5

Software to identify plasmid sequence data from metagenome using logistic regression and Minhash

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