Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for metagenomes
metagenomes
x
21 search results found
Squeezemeta
⭐
308
A complete pipeline for metagenomic analysis
Mag
⭐
164
Assembly and binning of metagenomes
Pyrodigal
⭐
111
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Plasflow
⭐
61
Software for prediction of plasmid sequences in metagenomic assemblies
Cenote Taker2
⭐
57
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
Metacache
⭐
49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Recycler
⭐
41
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33 by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
Mixs
⭐
29
Minimum Information about any (X) Sequence” (MIxS) specification
Gretel
⭐
25
An algorithm for recovering haplotypes from metagenomes
Partie
⭐
20
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
Microbiomestat
⭐
18
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Faucet
⭐
16
This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34 by Roye Rozov, Gil Goldshlager, Eran Halperin, and Ron Shamir
Pyfastani
⭐
14
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
Pyskani
⭐
13
PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.
Magiclamp
⭐
12
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
Symbnet
⭐
11
Teaching materials for SymbNET course: from MAGs to GEMs
Metacarvel
⭐
10
MetaCarvel: A scaffolder for metagenomes
Microbiome
⭐
10
scripts for microbiome analysis
Focus
⭐
5
FOCUS: An Agile Profiler for Metagenomic Data
Plasmidpicker
⭐
5
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
Plasmidhunter
⭐
5
This tool predicts plasmid sequences from genomic and metagenomic assemblies using machine learning.
Related Searches
Python Metagenomes (13)
Bioinformatics Metagenomes (13)
Metagenomics Metagenomes (8)
Assembly Metagenomes (5)
Plasmid Metagenomes (5)
Genome Metagenomes (5)
Fasta Metagenomes (5)
Pipeline Metagenomes (4)
Conda Metagenomes (4)
Bioconda Metagenomes (4)
1-21 of 21 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.