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Search results for bioinformatics metagenomes

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9 search results found

Assembly and binning of metagenomes

Pyrodigal ⭐ 111

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

Metacache ⭐ 49

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Minimum Information about any (X) Sequence” (MIxS) specification

An algorithm for recovering haplotypes from metagenomes

PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.

Pyfastani ⭐ 14

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

FOCUS: An Agile Profiler for Metagenomic Data

Plasmidpicker ⭐ 5

Software to identify plasmid sequence data from metagenome using logistic regression and Minhash

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